HPLC purity
High-performance liquid chromatography separates the components of a sample by how strongly they interact with a stationary phase. The area of the main peak relative to total peak area is reported as a purity percentage.
What it misses — A purity figure says nothing about which molecule the main peak is. It also under-reports anything that does not absorb at the detection wavelength or does not elute from the column — inorganic salts, residual solvents and endotoxin are all effectively invisible to it.
Mass spectrometry identity
Mass spectrometry measures the mass-to-charge ratio of ionised material. Comparing the observed mass against the mass calculated from the intended sequence confirms that the main component is the molecule named on the label.
What it misses — A matching mass does not prove the amino acid order, and it cannot distinguish isomers or most stereochemical differences. Sequence-level confirmation requires fragmentation analysis or sequencing, which is a separate test.
LAL endotoxin testing
The limulus amebocyte lysate assay detects bacterial endotoxin — lipopolysaccharide fragments from Gram-negative bacteria — and reports it in endotoxin units per milligram.
What it misses — It detects endotoxin specifically, not sterility, not fungal contamination, and not exotoxins. A low endotoxin figure does not mean a vial is sterile, and certain sample matrices can inhibit or enhance the assay unless a spike recovery control is run.
Appearance, water content and closure
Visual inspection covers cake structure, colour and the presence of particulates; Karl Fischer titration measures residual moisture, which drives long-term stability of a lyophilized cake.
What it misses — These are physical checks. A well-formed cake with low moisture can still be the wrong compound or a degraded one — appearance never substitutes for the analytical tests above.